Xcaliburscans (2024)

1. xCaliBR Scans

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23 jun 2018 · I have no proof of this -- but I believe that the bottom mass (and one that is assigned in ranges) is the preview scan mass. The Orbitrap doesn' ...
Imagine this strange scenario -- you have a peptide that you discovered with your search engine and you just want to take a quick look at...
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15 mrt 2023 · Scans are watermarked, though the chances of finding clean versions are very slim. Media in category "Excalibur scans".
The following 17 files are in this category, out of 17 total.

With hybrid instruments, it is common for the high resolution survey scans to be profile and lower resolution MS/MS scans to be centroid. Mascot Distiller.
There is a wide choice of software to convert Xcalibur data into peak lists and submit these to a Mascot Server for searching. This page lists some of the more widely used options. Remember that the spectra in Xcalibur raw files may contain centroid data, rather than profile data. With hybrid instruments, it is common for the high resolution survey scans to be profile and lower resolution MS/MS scans to be centroid.

A variety of Data Dependent experiments are supported by Xcalibur™ software. ... The differences arise in how the information from the full-scan MS is used to ...
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Select MS as the detector type in the dropdown box, as shown in the screen capture to the left. • You only need a scan filter if multiple types of MS scans were ...

11 jun 2019 · Xcalibur 3.0.63 was used for visual inspection of acquired spectral raw files and to extract an exact m/z list from the WFS spectra.
We have implemented a linear ion trap (LIT)-based SIM-stitching method for ultra-high-resolution Fourier transform mass spectrometry (FTMS) that increases the S/N over a wide m/z range compared to non-segmented wide full-scan (WFS) spectra. Here we described ...

the 'text method interface' of Xcalibur (v3.1.66.10, Thermo ... separate BoxCar scans and the preceding full scan into a single high dynamic range scan.

1 dec 2023 · While reading the help file in Xcalibur's Instrument Method tab it says the default scan time is 1.00 s which seems like overkill. Is the data ...
by JMB » Sun Dec 03, 2023 10:48 pm

During processing and after any requested enhancement of a relevant chromatogram peak apex scan, the Xcalibur data system submits the spectrum to a library ...

Analyst or Thermo Xcalibur). For all method export from Skyline, it is recommended that you perform the export function on an instance of Skyline running on ...

Because you averaged data from the MS1 full scan, it is providing the MS1 spectrum. For the spectrum above, 118 scans were averaged to provide the spectrum ...